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human genomic variation studies
Annotation Release 105 / dbSNP 141 Home separator DB Info separator Blog separator About Us separator Help separator FAQ separator History
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HiPipe, a high performance online pipeline with graphical user interface for NGS data analysis.
News
  • 2014.10.22
    Update NCBI database to annotation release 105.
  • 2014.10.22
    Update dbSNP database to Build 141.
  • 2014.08.04
    Fix bug of MegaQuery Download filter.
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VarioWatch :
providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era
Cheng, Y.C., Hsiao, F.C., Yeh, E.C., Lin, W.J., Tang, Louis, Tseng, H.C., Wu, H.T., Liu, C.K., Chen, C.C., Chen, Y.T., and Yao, Adam (2012) VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era doi:10.1093/nar/gks397 Full Text
Query By
Due to the insufficient manpower to maintain STRP-related data, query by STRP markers is unavailable now.
Select Region
Up stream(5') Base SNP ID Example SNP1 ID Gene NCBI symbol  or  NCBI Gene ID Upload a File Example Base Example SNP2 ID Example Down stream(3')
(bp) (bp)
Human
Upload Sequence   Example
Enter a sequence in FASTA format (Minimum : 18 bps  Maximum : 25000 bps)
Choose a specific chromosome or leave ALL to query the whole genome
Disease   Example
Pathway   Example
Task ID
Advance
Analyze the allele change ONLY on specified strand
Quality Check
No compare. Download NCBI dataset without comparison
Mask Sequence
Mask SNPs in query region according to dbSNP 137
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