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GRCh
A high performance bioinformatics pipeline for large-scale
human genomic variation studies
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Database info
Project Genome Build dbSNP
VarioWatch
Annotation Release 105 dbSNP 141
PrimerZ
Annotation Release 105 (Human)
Ensembl v75
dbSNP 141 (Human)


Detail source Information
VarioWatch Data Size Release Date Source Species
DNA Sequence 37 version (hs_ref_GRCh37.p13_chr*.fa.gz) *
2013/08/15
NCBI FTP
Human
ideogram.gz 53K
2006/02/08
NCBI FTP
Human
UniVariation.bcp.gz 43M
2014/07/11
NCBI FTP
Human
SNP.bcp.gz 738M
2014/05/27
NCBI FTP
Human
b141_ContigInfo.bcp.gz 141K
2014/05/27
NCBI FTP
Human
b141_SNPContigLoc.bcp.gz 1.4G
2014/05/27
NCBI FTP
Human
protein.fa.gz 7.9M
2014/02/04
NCBI FTP
Human
rna.fa.gz 29M
2014/02/04
NCBI FTP
Human
human.protein.gpff.gz 95M
2014/04/14
NCBI FTP
Human
seq_gene.md.gz 29M
2014/02/06
NCBI FTP
Human
seq_gene.q.gz 12M
2014/02/06
NCBI FTP
Human
nr.gz 4.5G
2014/05/03
NCBI FTP
Human
blast-2.2.26-x64-linux.tar.gz 134M
2012/03/03
NCBI FTP
Human
GO (go_201404-assocdb-data.gz) 5.5GB
2014/04/21
Gene Ontology
Human
ESE.txt 1.7K
2002/11/22
genes.mit.edu
Human
fas-hex2.txt 1.3K
2005/01/17
genes.mit.edu
Human
sift5.0.2.tar.gz 5980K
2012/12/31
SIFT
Human
uniprot_sprot.dat.gz 470M
2014/04/16
EMBL-EBI
Human
Allele frequencies (Han Chinese in Taiwan) 530M
2014/07/07
NGC
Human
Affy 10K (Mapping10K_Xba142.na32.annot.csv.zip) 3.2M
2014/05/12
Affymetrix
Human
Affy 100K (Mapping50K_Hind240.na32.annot.csv.zip / Mapping50K_Xba240.na32.annot.csv.zip) 12M / 13M
2014/05/12
Affymetrix
Human
Affy 500K (Mapping250K_Nsp.na32.annot.csv.zip / Mapping250K_Sty.na32.annot.csv.zip) 84M / 77M
2014/05/12
Affymetrix
Human
Affy 5.0 (GenomeWideSNP_5.na32.annot.csv.zip) 140M
2014/05/12
Affymetrix
Human
Affy 6.0 (GenomeWideSNP_6.na32.annot.csv.zip) 287M
2014/05/12
Affymetrix
Human
1000 Genomes Project
  • ALL.chr1.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr2.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr3.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr4.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr5.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr6.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr7.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr8.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr9.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr10.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr11.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr12.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr13.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr14.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr15.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr16.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr17.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr18.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr19.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr20.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr21.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chr22.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz
  • ALL.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz

  • 11G
  • 12G
  • 9.9G
  • 9.9G
  • 9.1G
  • 8.7G
  • 8.0G
  • 7.9G
  • 6.0G
  • 6.8G
  • 6.8G
  • 6.6G
  • 5.0G
  • 4.5G
  • 4.1G
  • 4.4G
  • 3.8G
  • 4.0G
  • 3.0G
  • 3.1G
  • 1.9G
  • 1.8G
  • 4.5G
2012/04/24
ftp-trace.ncbi.nih.gov
Human
hsa_gene_map.tab 134K
2011/01/25
KEGG
Human
map_title.tab 14K
2011/01/16
KEGG
Human
gwascatalog.txt 8.6M
2014/05/12
National Human Genome Research Institute (NHGRI)
Human
mirdsnp-dsnps-v11.03.csv 189K
2011/06/15 (v11.03)
miRdSNP
Human
SNPedia.gff 8.1M
2014/02/15
SNPedia
Human
variant_summary.txt.gz 11M
2016/08/04
NCBI FTP
Human
submission_summary.txt.gz 8M
2016/08/04
NCBI FTP
Human
CosmicMutantExport.tsv.gz 260M
2016/09/16
Sanger FTP
Human
PrimerZ Data Size Release Date Source Species
DNA Sequence 37 version (hs_ref_GRCh37.p13_chr*.fa.gz) *
2013/08/15
NCBI FTP
Human
DNA Sequence 37 version (mm_ref_chr*.fa.gz) *
2011/05/04
NCBI FTP
Mouse
ideogram.gz 53K
2006/02/08
NCBI FTP
Human
UniVariation.bcp.gz 43M
2014/07/11
NCBI FTP
Human
SNP.bcp.gz 738M
2014/05/27
NCBI FTP
Human
b141_ContigInfo.bcp.gz 141K
2014/05/27
NCBI FTP
Human
b141_SNPContigLoc.bcp.gz 1.4G
2014/05/27
NCBI FTP
Human
seq_gene.md.gz 29M
2014/02/06
NCBI FTP
Human
seq_gene.q.gz 12M
2014/02/06
NCBI FTP
Human
Annotation Release 105
Real time
NCBI Web
Mouse
Ensembl v75 (homo_sapiens_core_75_37) *
2014/02/17
Ensembl FTP
Human
Ensembl v75 (mus_musculus_core_75_38) *
2014/02/17
Ensembl FTP
Mouse
Ensembl v75 (rattus_norvegicus_core_75_5) *
2014/02/17
Ensembl FTP
Rats
Ensembl v75 (equus_caballus_core_75_2) *
2014/02/17
Ensembl FTP
Horse
Ensembl v75 (other species)
2014/02/17
Ensembl FTP
Other species